U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX2635292: GSM2534811: primary HSCs infected with shRNA-control, biological rep1; Mus musculus; RNA-Seq
2 ILLUMINA (HiSeq X Ten) runs: 43.6M spots, 6.5G bases, 2.7Gb downloads

Submitted by: NCBI (GEO)
Study: Expression data that were specifically regulated by lncRNA-LFAR1 in mouse primary HSCs
show Abstracthide Abstract
Long noncoding RNAs (lncRNAs) play important roles in various biological processes; however, few have been identified that regulate hepatic stellate cells (HSCs) activation and the progression of liver fibrosis. Through a detailed analysis of the expression of lncRNAs in various tissues, we discovered the existence of a liver enriched lncRNA-LFAR1 (lncRNA-Liver Fibrosis Associated RNA1). To identify the roles of lncRNA-LFAR1 in liver fiboris, we systematically analyzed the regulation of mRNAs in primary HSCs infected with two separated lnc-LFAR1-shRNAs by RNA-seq, which revealed a panel of mRNAs that were specifically regulated by lncRNA-LFAR1 in mouse primary HSCs. Overall design: To identify the roles of lncRNA-LFAR1 in liver fibrosis, we systematically analyzed the regulation of mRNAs in primary HSCs infected with shRNA-control (n=2), lncRNA-shRNA1 (n=2) and lncRNA-shRNA3 (n=2) by RNA-seq.
Sample: primary HSCs infected with shRNA-control, biological rep1
SAMN06563713 • SRS2044073 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: HiSeq X Ten
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA was harvested using Trizol reagent. Illumina TruSeq RNA Sample Prep Kit was used with 1 ug of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM2534811
Links:
Runs: 2 runs, 43.6M spots, 6.5G bases, 2.7Gb
Run# of Spots# of BasesSizePublished
SRR533796621,795,4623.3G1.2Gb2017-03-15
SRR533796721,795,4623.3G1.5Gb2017-03-15

ID:
3813364

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...